David Bader

2021 Distinguished Visitors Program, IEEE Computer Society

2019 Fellow, SIAM

2014 Outstanding Senior Faculty Research Award, Georgia Tech

2013 Outstanding Service Contributions Award, IEEE Computer Society Technical Committee on Parallel Processing

2012 Distinguished Alumni Award, University of Maryland’s Electrical and Computer Engineering

2012 Fellow, AAAS

2011 Golden Core Member Award, IEEE Computer Society

2010 Fellow, IEEE

2010 Meritorious Service Award, IEEE Computer Society

2007 Dean's Award, Georgia Tech, College of Computing

2002 Lawton-Ellis Award, University of New Mexico

2001 CAREER, National Science Foundation

2001 Regents' Lecturer, University of New Mexico

2000 Junior Research Excellence Award, University of New Mexico

2000 Young Outstanding Engineer Award, IEEE

Contour Algorithm for Connectivity
The 30th IEEE International Conference on High Performance Computing, Data, and Analytics (HiPC), December 2023

Fast Triangle Counting (Graph Challenge Innovation Award)
IEEE, September 2023

Parallel Longest Common SubSequence Analysis In Chapel
IEEE, September 2023

Property Graphs in Arachne
IEEE, September 2023

Triangle Counting Through Cover-Edges (Graph Challenge Student Innovation Award)
IEEE, September 2023

Billion-scale Detection of Isomorphic Nodes
Workshop in Graphs, Architectures, Programming, and Learning (GrAPL), held in conjunction with \textit{The IEEE International Parallel and Distributed Processing Symposium (IPDPS 2023), May 2023

High-Performance Truss Analysis in Arkouda
December 2022

Arachne: An Arkouda Package for Large-Scale Graph Analytics
The 26th Annual IEEE High Performance Extreme Computing Conference, September 2022

Triangle Centrality in Arkouda
{The 26th Annual IEEE High Performance Extreme Computing Conference, September 2022

Parallel Suffix Sorting for Large String Analytics
14th International Conference on Parallel Processing and Applied Mathematics (PPAM), September 2022

Truss Analytics Algorithms and Integration in Arkouda
June 2022

Graph Analysis Trends and Opportunities
November 2014

Du, Zhihui, & Rodriguez, Oliver Alvarado, & Patchett, Joseph, & Bader, David (2021). Interactive Graph Stream Analytics in Arkouda. Algorithms, 14(8),

Bader, David (2021). Linux and Supercomputing: How my passion for building COTS systems led to an HPC revolution. IEEE Annals on the History of Computing, 43(3),

Goenawan, Ivan Hendy, & Du, Zhihui, & Wu, Chao, & Sun, Yankui, & Wei, Jianyan, & Bader, David (2021). Dynamics Signature based Anomaly Detection. Software: Practice and Experience, 53(1), 160-175.

Gera, Prasun, & Kim, Hyojong, & Sao, Piyush, & Kim, Hyesoon, & Bader, David (2020). Traversing Large Graphs on GPUs with Unified Memory. Proceedings of the VLDB Endowment, 13(7), 1119-1133.

Bader, David (2019). Editorial from the Editor-in-Chief. ACM Transactions on Parallel Computing TOPC, 6(1), 1--2.

Munguía, Lluís-Miquel, & Ahmed, Shabbir, & Bader, David, & Nemhauser, George L., & Shao, Yufen, & Papageorgiou, Dimitri J. (2019). Tailoring parallel alternating criteria search for domain specific MIPs: Application to maritime inventory routing. Computers & Operations Research, 111, 21 - 34.

McLaughlin, Adam, & Bader, David (2018). Accelerating GPU betweenness centrality. Communications of the ACM, 61(8), 85--92.

Lluís-Miquel Munguía, , & Ahmed, Shabbir, & Bader, David, & Nemhauser, George L., & Shao, Yufen (2018). Alternating criteria search: a parallel large neighborhood search algorithm for mixed integer programs. Computational Optimization and Applications, 69(1), 1--24.

Nathan, Eisha, & Bader, David (2018). Incrementally updating Katz centrality in dynamic graphs. Social Network Analysis and Mining, 8(1), 26.

Nathan, Eisha, & Sanders, Geoffrey, & Van Emden Henson, , & Bader, David (2018). Numerically approximating centrality for graph ranking guarantees. Journal of Computational Science, 26, 205--216.

Lluís-Miquel Munguía, , & Ahmed, Shabbir, & Bader, David, & Nemhauser, George L., & Goel, Vikas, & Shao, Yufen (2017). A parallel local search framework for the Fixed-Charge Multicommodity Network Flow problem. Computers \& Optimization Research, 77, 44--57.

You, Yang, & Fu, Haohuan, & Bader, David, & Yang, Guangwen (2017). Designing and implementing a heuristic cross-architecture combination for graph traversal. Journal of Parallel and Distributed Computing, 108, 95--105.

Bader, David (2017). Editor's Note. IEEE Transactions on Parallel and Distributed Systems, 28(12), 3328--3329.

Bader, David (2017). Editor's Note. IEEE Transactions on Parallel and Distributed Systems, 28(1), 1.

Yin, Zhaoming, & Tang, Jijun, & Schaeffer, Stephen W., & Bader, David (2017). Exemplar or Matching: Modeling DCJ Problems with Unequal Content Genome Data. CoRR, abs/1705.06559,

Nathan, Eisha, & Sanders, Geoffrey, & Fairbanks, James, & Van Emden Henson, , & Bader, David (2017). Graph Ranking Guarantees for Numerical Approximations to Katz Centrality. Procedia Computer Science, 108, 68--78.

Nathan, Eisha, & Zakrzewska, Anita, & Riedy, E. Jason, & Bader, David (2017). Local Community Detection in Dynamic Graphs Using Personalized Centrality. Algorithms, 10(3), 102--128.

Du, Zhihui, & Ge, Rong, & Lee, Victor W., & Vuduc, Richard W., & Bader, David, & He, Ligang (2017). Modeling the Power Variability of Core Speed Scaling on Homogeneous Multicore Systems. Scientific Programming, 2017, 8686971:1--13.

Fairbanks, James P., & Bader, David, & Sanders, Geoffrey D. (2017). Spectral partitioning with blends of eigenvectors. Journal of Complex Networks, 5(4), 551--580.

Yang, Quan, & Du, Zhihui, & Cao, Zhou-Jian, & Tao, Jian, & Bader, David (2016). A New Parallel Method for Binary Black Hole Simulations. Scientific Programming, 2016, 2360492:1--14.

Bader, David (2016). Editor's Note. IEEE Transactions on Parallel and Distributed Systems, 27(1), 1.

Bader, David (2016). Evolving MPI+X Toward Exascale. IEEE Computer, 49(8), 10.

Yin, Zhaoming, & Tang, Jijun, & Schaeffer, Stephen W., & Bader, David (2016). Exemplar or matching: modeling DCJ problems with unequal content genome data. Journal of Combinatorial Optimization, 32(4), 1165--1181.

Dauwe, Daniel, & Jonardi, Eric, & Friese, Ryan, & Pasricha, Sudeep, & Maciejewski, Anthony A., & Bader, David, & Siegel, Howard Jay (2016). HPC node performance and energy modeling with the co-location of applications. Journal of Supercomputing, 72(12), 4771--4809.

Zakrzewska, Anita, & Bader, David (2016). Tracking local communities in streaming graphs with a dynamic algorithm. Social Network Analysis and Mining, 6(1), 65:1--16.

Fairbanks, James P., & Kannan, Ramakrishnan, & Park, Haesun, & Bader, David (2015). Behavioral clusters in dynamic graphs. Parallel Computing, 47, 38--50.

Bader, David (2015). Editor's Note. IEEE Transactions on Parallel and Distributed Systems, 26(1), 1.

Kepner, Jeremy, & Bader, David, & Buluç, Aydın, & Gilbert, John, & Mattson, Timothy, & Meyerhenke, Henning (2015). Graphs, Matrices, and the GraphBLAS: Seven Good Reasons. Procedia Computer Science, 51, 2453--2462.

Fairbanks, James P., & Sanders, Geoffrey D., & Bader, David (2015). Spectral Partitioning with Blends of Eigenvectors. CoRR, abs/1510.04658,

Bader, David (2015). State of the Journal. IEEE Transactions on Computers, 64(6), 1506--1508.

Chai, Yunpeng, & Du, Zhihui, & Qin, Xiao, & Bader, David (2015). WEC: Improving Durability of SSD Cache Drives by Caching Write-Efficient Data. IEEE Transactions on Computers, 64(11), 3304--3316.

Bader, David, & Mutzel, Petra (2014). Introduction to Special Issue ALENEX'12. ACM Journal of Experimental Algorithmics, 19(1),

Mattson, Tim, & Bader, David, & Berry, Jonathan W., & Aydin Bulu\cc, , & Dongarra, Jack J., & Faloutsos, Christos, & Feo, John, & Gilbert, John R., & Gonzalez, Joseph, & Hendrickson, Bruce, & Kepner, Jeremy, & Leiserson, Charles E., & Lumsdaine, Andrew, & Padua, David A., & Poole, Stephen W., & Reinhardt, Steven P., & Stonebraker, Mike, & Wallach, Steve, & Yoo, Andrew (2014). Standards for Graph Algorithm Primitives. CoRR, abs/1408.0393, 1--2.

Bader, David (2014). State of the Journal. IEEE Transactions on Parallel and Distributed Systems, 25(1), 1.

McColl, Robert, & Ediger, David, & Poovey, Jason, & Campbell, Dan, & Bader, David (2013). A Brief Study of Open Source Graph Databases. CoRR, abs/1309.2675,

Green, Oded, & Bader, David (2013). Faster Betweenness Centrality Based on Data Structure Experimentation. Procedia Computer Science, 18, 399--408.

Ediger, David, & Jiang, Karl, & Riedy, E. Jason, & Bader, David (2013). GraphCT: Multithreaded Algorithms for Massive Graph Analysis. IEEE Transactions on Parallel \& Distributed Systems, 24(11), 2220--2229.

Riedy, E. Jason, & Bader, David (2013). Massive streaming data analytics: a graph-based approach. ACM Crossroads, 19(3), 37--43.

Liu, Xing, & Pande, Pushkar R., & Meyerhenke, Henning, & Bader, David (2013). PASQUAL: Parallel Techniques for Next Generation Genome Sequence Assembly. IEEE Transactions on Parallel \& Distributed Systems, 24(5), 977--986.

Yin, Zhaoming, & Tang, Jijun, & Schaeffer, Stephen W., & Bader, David (2013). Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes. Procedia Computer Science, 18, 561--570.

Swenson, Shel, & Simmhan, Yogesh, & Prasanna, Viktor K., & Parashar, Manish, & Riedy, E. Jason, & Bader, David, & Vuduc, Richard W. (2013). Sustainable Software Development for Next-Gen Sequencing (NGS) Bioinformatics on Emerging Platforms. CoRR, abs/1309.1828,

Bader, David, & Tsigas, Philippas (2012). ACM journal on experimental algorithmics special issue on multicore algorithms. ACM Journal of Experimental Algorithmics, 17(1), 1.

Chai, Yunpeng, & Du, Zhihui, & Bader, David, & Qin, Xiao (2012). Efficient Data Migration to Conserve Energy in Streaming Media Storage Systems. IEEE Transactions on Parallel \& Distributed Systems, 23(11), 2081--2093.

Swenson, M. Shel, & Anderson, Joshua, & Ash, Andrew, & Gaurav, Prashant, & Sükösd, Zsuzsanna, & Bader, David, & Harvey, Stephen C., & Heitsch, Christine E. (2012). GTfold: Enabling parallel RNA secondary structure prediction on multi-core desktops. BMC Research Notes, 5, 341--347.

Kang, Seunghwa, & Ediger, David, & Bader, David (2011). Algorithm Engineering Challenges in Multicore and Manycore Systems. it - Information Technology, 53(6), 266--273.

Ye, Yin, & Du, Zhihui, & Bader, David (2011). GPUMemSort: A High Performance Graphic Co-processors Sorting Algorithm for Large Scale In-Memory Data. GSTF International Journal on Computing, 1(2), 23--28.

Bader, David, & Kaeli, David R., & Kindratenko, Volodymyr V. (2011). Guest Editor's Introduction: Special Issue on High-Performance Computing with Accelerators. IEEE Transactions on Parallel and Distributed Systems, 22(1), 3--6.

Chen, Mingyu, & Bader, David (2011). On the random access performance of Cell Broadband Engine with graph analysis application. CoRR, abs/1105.5881,

Kang, Seunghwa, & Tang, Jijun, & Schaeffer, Stephen W., & Bader, David (2011). Rec-DCM-Eigen: Reconstructing a Less Parsimonious but More Accurate Tree in Shorter Time. PLOS ONE, 6(8), 1--12.

Bader, David, & Agarwal, Virat, & Kang, Seunghwa (2009). Computing discrete transforms on the Cell Broadband Engine. Parallel Computing, 35(3), 119--137.

Agarwal, Virat, & Bader, David, & Dan, Lin, & Liu, Lurng-Kuo, & Pasetto, Davide, & Perrone, Michael, & Petrini, Fabrizio (2009). Faster FAST: multicore acceleration of streaming financial data. Computer Science - Research and Development, 23(3-4), 249--257.

Bader, David, & Madduri, Kamesh (2008). A graph-theoretic analysis of the human protein-interaction network using multicore parallel algorithms. Parallel Computing, 34(11), 627--639.

Bader, David, & Aluru, Srinivas (2008). Guest editorial: High-performance computational biology. Parallel Computing, 34(11), 613--615.

Dhakal, Sagar, & Hayat, Majeed M., & Pezoa, Jorge E., & Yang, Cundong, & Bader, David (2007). Dynamic Load Balancing in Distributed Systems in the Presence of Delays: A Regeneration-Theory Approach. IEEE Transactions on Parallel \& Distributed Systems, 18(4), 485--497.

Bader, David, & Agarwal, Virat, & Madduri, Kamesh, & Kang, Seunghwa (2007). High performance combinatorial algorithm design on the Cell Broadband Engine processor. Parallel Computing, 33(10-11), 720--740.

Low, Diana H. P., & Veeravalli, Bharadwaj, & Bader, David (2007). On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures. Journal of Parallel and Distributed Computing, 67(9), 1007--1017.

Bader, David, & Roshan, Usman W., & Stamatakis, Alexandros (2006). Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. Advances in Computers, 68, 127--176.

Cong, Guojing, & Bader, David (2006). Designing irregular parallel algorithms with mutual exclusion and lock-free protocols. Journal of Parallel and Distributed Computing, 66(6), 854--866.

Bader, David, & Madduri, K., & Gilbert, J. R., & Shah, V., & Kepner, J., & Meuse, T., & Krishnamurthy, A. (2006). Designing Scalable Synthetic Compact Applications for Benchmarking High Productivity Computing Systems. CTWatch Quarterly, 2(4B), 41--51.

Aluru, Srinivas, & Amato, Nancy M., & Bader, David (2006). Editorial: Special Section on High-Performance Computational Biology. IEEE Transactions on Parallel and Distributed Systems, 17(8), 737--739.

Bader, David, & Cong, Guojing (2006). Fast shared-memory algorithms for computing the minimum spanning forest of sparse graphs. Journal of Parallel and Distributed Computing, 66(11), 1366--1378.

Bader, David, & Cong, Guojing (2005). A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs). Journal of Parallel and Distributed Computing, 65(9), 994--1006.

Snir, Marc, & Bader, David (2004). A Framework for Measuring Supercomputer Productivity. International Journal of High Performance Computing Applications, 18(4), 417--432.

Bader, David (2004). An improved, randomized algorithm for parallel selection with an experimental study. Journal of Parallel and Distributed Computing, 64(9), 1051--1059.

Bader, David (2004). Computational biology and high-performance computing. Communications of the ACM, 47(11), 34--41.

Bader, David, & Aluru, Srinivas (2004). Special Issue: High Performance Computational Biology. Concurrency and Computation: Practice and Experience, 16(9), 817--821.

Aluru, Srinivas, & Bader, David (2003). Guest Editor's Introduction: Special issue on high-performance computational biology. Journal of Parallel and Distributed Computing, 63(7-8), 671--673.

Moret, Bernard M. E., & Bader, David, & Warnow, Tandy J. (2002). High-Performance Algorithm Engineering for Computational Phylogenetics. The Journal of Supercomputing, 22(1), 99--111.

Sun, Yuzhong, & Lin, Xiaola, & Pan, Yi, & Lau, R. W. H., & Bader, David, & Cheung, P. Y. S. (2002). Generalized block shift network for clusters. IEEE Transactions on Circuits and Systems I: Fundamental Theory and Applications, 49(4), 543--546.

Bader, David, & Moret, Bernard M. E., & Yan, Mi (2001). A Linear-Time Algorithm for Computing Inversion Distance Between Two Signed Permutations with an Experimental Study. Journal of Computational Biology, 8(5), 483--491.

Bader, David, & Pennington, Rob (2001). Applications. IJHPCA, 15(2), 181--185.

Bader, David, & Pennington, Robert (2001). Cluster Computing: Applications. The International Journal of High Performance Computing Applications, 15(2), 181--186.

Kalluri, Satya, & JaJa, Joseph, & Bader, David, & Townshend, John, & Jájá, Joseph, & Fallahadl, Hassan, & Zhang, Zengyan, & Fallah-adl, Hassan (2000). High performance computing algorithms for land cover dynamics using remote sensing data. International Journal of Remote Sensing, 21(6-7), 1513--1536.

Zhang, Zengyan, & JaJa, Joseph F., & Bader, David, & Kalluri, Satya N. V., & Song, Huiping, & El Saleous, Nazmi, & Vermote, Eric, & Townshend, John R. G. (2000). Kronos: A software system for the processing and retrieval of large-scale AVHRR data sets. PE \& RS - Photogrammetric Engineering and Remote Sensing, 66, 1073--1082.

Bader, David (1999). A New, Architectural Paradigm for High-performance Computing. Scalable Computing: Practice and Experience, 2(2),

Bader, David, & Joseph JaJa, (1999). SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs). Journal of Parallel and Distributed Computing, 58(1), 92--108.

Helman, David R., & Joseph JaJa, , & Bader, David (1998). A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation. ACM Journal of Experimental Algorithmics, 3(4), 1--24.

Helman, David R., & Bader, David, & Joseph JaJa, (1998). A Randomized Parallel Sorting Algorithm with an Experimental Study. Journal of Parallel and Distributed Computing, 52(1), 1--23.

Bader, David, & Joseph JaJa, , & Harwood, David, & Davis, Larry S. (1996). Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study. The Journal of Supercomputing, 10(2), 141--168.

Bader, David, & Joseph JaJa, (1996). Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. Journal of Parallel and Distributed Computing, 35(2), 173--190.

Bader, David, & Helman, David R., & Joseph JaJa, (1996). Practical Parallel Algorithms for Personalized Communication and Integer Sorting. ACM Journal of Experimental Algorithmics, 1(3), 1--42.

Bader, David, & Joseph JaJa, , & Chellappa, Rama (1995). Scalable data parallel algorithms for texture synthesis using Gibbs random fields. IEEE Transactions on Image Processing, 4(10), 1456--1460.

Bader, David (2016). Sorting Signed Permutations by Reversal (Reversal Distance), Kao, Ming-Yang (Eds.), Springer. (pp. 2026--2028). New York: Springer

Bader, David, & Meyerhenke, Henning, & Sanders, Peter, & Schulz, Christian, & Kappes, Andrea, & Wagner, Dorothea (2014). Benchmarking for Graph Clustering and Partitioning, Alhajj, Reda; Rokne, Jon (Eds.), Springer. (pp. 73--82). New York: Springer

Kang, Seunghwa, & Arora, Nitin, & Shringarpure, Aashay, & Vuduc, Richard W., & Bader, David (2013). Evaluating Multicore Processors and Accelerators for Dense Numerical Computations, Rajasekaran, Sanguthevar; Fiondella, Lance; Ahmed, Mohamed; Ammar, Reda A. (Eds.), Chapman \& Hall. (pp. 241--280). New York: Chapman \& Hall

Riedy, E. Jason, & Meyerhenke, Henning, & Ediger, David, & Bader, David (2013). Parallel Community Detection for Massive Graphs, Bader, David A.; Meyerhenke, Henning; Sanders, Peter; Wagner, Dorothea (Eds.), American Mathematical Society. (pp. 207--222). Providence, RI: American Mathematical Society

Riedy, E. Jason, & Meyerhenke, Henning, & Ediger, David, & Bader, David (2013). Parallel community detection for massive graphs, Bader, David A.; Meyerhenke, Henning; Sanders, Peter; Wagner, Dorothea (Eds.), AMC. (pp. 207--222). Providence, RI: AMC

Bader, David, & Madduri, Kamesh (2012). Computational Challenges in Emerging Combinatorial Scientific Computing Applications, Naumann, Uwe; Schenk, Olaf (Eds.), Chapman \& Hall. (pp. 471--494). New York: Chapman \& Hall

Kepner, Jeremy, & Bader, David, & Bond, Robert, & Bliss, Nadya, & Faloutsos, Christos, & Hendrickson, Bruce, & Gilbert, John, & Robinson, Eric (2011). Fundamental Questions in the Analysis of Large Graphs, Kepner, Jeremy; Gilbert, John R. (Eds.), SIAM. (pp. 353--357). Philadelphia, PA: SIAM

Bader, David, & Cong, Guojing (2011). Graph Algorithms, Padua, David (Eds.), Springer. (pp. 796--805). Boston, MA: Springer

Cong, Guojing, & Bader, David (2011). Hybrid Programming With SIMPLE, Padua, David (Eds.), Springer. (pp. 851--860). Boston, MA: Springer

Bader, David, & Heitsch, Christine, & Madduri, Kamesh (2011). Large-Scale Network Analysis, Kepner, Jeremy; Gilbert, John R. (Eds.), SIAM. (pp. 253--285). Philadelphia, PA: SIAM

Bader, David, & Cong, Guojing (2011). Spanning Tree, Minimum Weight, Padua, David (Eds.), Springer. (pp. 1870--1877). Boston, MA: Springer

Bader, David, & Cong, Guojing (2011). SWARM: A Parallel Programming Framework for Multicore Processors, Padua, David (Eds.), Springer. (pp. 1966--1971). Boston, MA: Springer

Bader, David, & Agarwal, Virat, & Madduri, Kamesh, & Petrini, Fabrizio (2010). Combinatorial Algorithm Design on the Cell/B.E. Processor, Kurzak, Jakub; Bader, David A.; Dongarra, Jack (Eds.), CRC Press. (pp. 195--216). Boca Raton: CRC Press

Agarwal, Virat, & Bader, David (2010). Designing Fast Fourier Transform for the IBM Cell Broadband Engine, Kurzak, Jakub; Bader, David A.; Dongarra, Jack (Eds.), CRC Press. (pp. 151--170). Boca Raton: CRC Press

Agarwal, Virat, & Duan, Lin, & Liu, Lurng-Kuo, & Perrone, Michael, & Petrini, Fabrizio, & Pasetto, Davide, & Bader, David (2010). The Case of the Fast Financial Feed, Gavrilovska, Ada (Eds.), Chapman \& Hall. (pp. 305--328). New York: Chapman \& Hall

Bader, David (2008). Engineering Algorithms for Computational Biology, Kao, Ming-Yang (Eds.), Springer. Boston, MA: Springer

Bader, David (2008). High Performance Algorithm Engineering for Large-scale Problems, Kao, Ming-Yang (Eds.), Springer. (pp. 914--918). Berlin: Springer

Bader, David (2008). Sorting Signed Permutations by Reversal (Reversal Distance), Kao, Ming-Yang (Eds.), Springer. Boston, MA: Springer

Bader, David, & Madduri, Kamesh, & Cong, Guojing, & Feo, John (2007). Design of Multithreaded Algorithms for Combinatorial Problems, Rajasekaran, Sanguthevar; Reif, John (Eds.), Chapman and Hall. (pp. 1--30). New York: Chapman and Hall

Bader, David, & Cong, Guojing (2007). Efficient Parallel Graph Algorithms for Shared-memory Multiprocessors, Rajasekaran, Sanguthevar; Reif, John (Eds.), Chapman and Hall. (pp. 1--40). New York: Chapman and Hall

Madduri, Kamesh, & c, , & Berry, Jonathan W., & Crobak, Joseph R. (2007). Multithreaded Algorithms for Processing Massive Graphs, Bader, David A. (Eds.), Chapman \& Hall. (pp. 1--26). New York: Chapman \& Hall

Aluru, Srinivas, & Amato, Nancy, & Bader, David, & Bhandarkar, Suchindra, & Kale, Laxmikant, & Marinescu, Dan C. (2006). Parallel Computational Biology, Heroux, Michael A.; Raghavan, Padma; Simon, Horst D. (Eds.), SIAM. (pp. 357--378). Philadelphia, PA: SIAM

Bader, David, & Yan, Mi (2005). High-Performance Algorithms for Phylogeny Reconstruction with Maximum Parsimony, Aluru, Srinivas (Eds.), Chapman \& Hall. (pp. 1--19). New York: Chapman \& Hall

Williams, Tiffani L., & Bader, David, & Moret, Bernard M. E., & Yan, Mi (2005). High-Performance Phylogeny Reconstruction Under Maximum Parsimony, Zomaya, Albert Y. (Eds.), John Wiley \& Sons. (pp. 369--394). Hoboken, NJ: John Wiley \& Sons

Bader, David, & Hart, William E., & Phillips, Cynthia A. (2005). Parallel Algorithm Design for Branch and Bound, Greenberg, H. J. (Eds.), Springer. (pp. 1--44). New York: Springer

Bader, David, & Moret, Bernard M. E., & Sanders, Peter (2002). Algorithm Engineering for Parallel Computation, Fleischer, Rudolf; Moret, Bernard; Schmidt, Erik Meineche (Eds.), Springer. (pp. 1--23). Berlin: Springer

Exploratory Large Scale Graph Analytics in Arkouda
June 2021

LAGraph: Linear Algebra, Network Analysis Libraries, and the Study of Graph Algorithms
IEEE Computer Society, May 2021

QoS-Aware and Fault-Tolerant Replica Placement
Springer, October (4th Quarter/Autumn) 2020

A 2-Approximation Algorithm for QoS-Aware and Fault-Tolerant Replica Placement
IEEE, September 2020

GPU Accelerated Anomaly Detection of Large Scale Light Curves
IEEE, September 2020

Using RAPIDS AI to Accelerate Graph Data Science Workflows
IEEE, September 2020

Accelerating and Expanding End-to-End Data Science Workflows with DL/ML Interoperability Using RAPIDS
ACM, August 2020

Performance Impact of Memory Channels on Sparse and Irregular Algorithms
IEEE/ACM, November 2019

Skip the Intersection: Quickly Counting Common Neighbors on Shared-Memory Systems
IEEE, September 2019

A New Algorithm Model for Massive-Scale Streaming Graph Analysis
Sociedad Española de Matemática Aplicada, July (3rd Quarter/Summer) 2019

Fast and Adaptive List Intersections on the GPU
IEEE Computer Society, 2018

Hornet: An Efficient Data Structure for Dynamic Sparse Graphs and Matrices on GPUs
IEEE Computer Society, 2018

Introduction to HiCOMB 2018
IEEE Computer Society, 2018

Logarithmic Radix Binning and Vectorized Triangle Counting
IEEE Computer Society, 2018

Massive-scale Streaming Analytics: Models, Parallelism, & Real-world Applications
ACM, 2018

Ranking in Dynamic Graphs Using Exponential Centrality
Springer, 2018

Scalable Katz Ranking Computation in Large Static and Dynamic Graphs
Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2018

A New Algorithmic Model for Graph Analysis of Streaming Data
August 2018

A Dynamic Algorithm for Updating Katz Centrality in Graphs
ACM, 2017

Approximating Personalized Katz Centrality in Dynamic Graphs
Springer, 2017

Design and implementation of parallel PageRank on multicore platforms
IEEE Computer Society, 2017

Exact and Parallel Triangle Counting in Dynamic Graphs
IEEE Computer Society, 2017

Introduction to EMBRACE Workshop
IEEE Computer Society, 2017

Proceedings of the Sixteenth IEEE International Workshop on High Performance Computational Biology (HiCOMB 2017), Orlando, FL, May 2017.
IEEE Computer Society Press, 2017

Quickly finding a truss in a haystack
IEEE Computer Society, 2017

Streaming Graph Sampling with Size Restrictions
ACM, 2017

When Good Enough Is Better: Energy-Aware Scheduling for Multicore Servers
IEEE Computer Society, 2017

A local measure of community change in dynamic graphs
IEEE Computer Society, 2016

A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code
IEEE Computer Society, 2016

Aging data in dynamic graphs: A comparative study
IEEE Computer Society, 2016

cuSTINGER: Supporting dynamic graph algorithms for GPUs
IEEE Computer Society, 2016

GABB 2016 Keynote
IEEE Computer Society, 2016

HiCOMB Introduction and Committees
IEEE Computer Society, 2016

Mathematical foundations of the GraphBLAS
IEEE Computer Society, 2016

New stopping criteria for spectral partitioning
IEEE Computer Society, 2016

Semantic database applications at the Samtavro Cemetery, Georgia
Archaeopress, 2016

A Dynamic Algorithm for Local Community Detection in Graphs
ACM, 2015

A fast, energy-efficient abstraction for simultaneous breadth-first searches
IEEE Computer Society, 2015

A Methodology for Co-Location Aware Application Performance Modeling in Multicore Computing
IEEE Computer Society, 2015

Fast Execution of Simultaneous Breadth-First Searches on Sparse Graphs
IEEE Computer Society, 2015

Fast Incremental Community Detection on Dynamic Graphs
Springer, 2015

HiCOMB Introduction and Committees
IEEE Computer Society, 2015

Parallel Methods for Verifying the Consistency of Weakly-Ordered Architectures
IEEE Computer Society, 2015

ParLearning Keynotes
IEEE Computer Society, 2015

A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents
Springer, 2014

A performance evaluation of open source graph databases
ACM, 2014

Designing a Heuristic Cross-Architecture Combination for Breadth-First Search
IEEE Computer Society, 2014

GABB Introduction
IEEE Computer Society, 2014

HiCOMB Introduction and Committees
IEEE Computer Society, 2014

Load balanced clustering coefficients
ACM, 2014

Optimizing energy consumption and parallel performance for static and dynamic betweenness centrality using GPUs
IEEE Computer Society, 2014

Revisiting Edge and Node Parallelism for Dynamic GPU Graph Analytics
ACM, 2014

Scalable and High Performance Betweenness Centrality on the GPU
IEEE Computer Society, 2014

A new parallel algorithm for connected components in dynamic graphs
IEEE Computer Society, 2013

A statistical framework for streaming graph analysis
ACM, 2013

Designing Hybrid Architectures for Massive-Scale Graph Analysis
IEEE Computer Society, 2013

Detecting insider threats in a real corporate database of computer usage activity
ACM, 2013

Energy-Efficient Scheduling for Best-Effort Interactive Services to Achieve High Response Quality
IEEE Computer Society, 2013

Faster Clustering Coefficient Using Vertex Covers
IEEE Computer Society, 2013

HiCOMB Introduction
IEEE Computer Society, 2013

Investigating Graph Algorithms in the BSP Model on the Cray XMT
IEEE Computer Society, 2013

Measuring the Sensitivity of Graph Metrics to Missing Data
Springer, 2013

Multithreaded Community Monitoring for Massive Streaming Graph Data
IEEE Computer Society, 2013

Standards for graph algorithm primitives
IEEE Computer Society, 2013

A Fast Algorithm for Streaming Betweenness Centrality
IEEE Computer Society, 2012

Analysis of streaming social networks and graphs on multicore architectures
IEEE Computer Society, 2012

Enhancing Cache Coherent Architectures with access patterns for embedded manycore systems
IEEE Computer Society, 2012

GPU Merge Path: A GPU Merging Algorithm
ACM, 2012

HCW 2012 Keynote Talk: Analyzing massive data using heterogeneous computing
IEEE Computer Society, 2012

HiCOMB Introduction
IEEE Computer Society, 2012

Proceedings of the 14th Meeting on Algorithm Engineering \& Experiments, ALENEX 2012, The Westin Miyako, Kyoto, Japan, January 16, 2012
SIAM, 2012

Scalable Multi-threaded Community Detection in Social Networks
IEEE Computer Society, 2012

STINGER: High performance data structure for streaming graphs
IEEE Computer Society, 2012

Task-based parallel breadth-first search in heterogeneous environments
IEEE Computer Society, 2012

A Waterfall Model to Achieve Energy Efficient Tasks Mapping for Large Scale GPU Clusters
IEEE Computer Society, 2011

HiCOMB Introduction
IEEE Computer Society, 2011

Parallel Community Detection for Massive Graphs
Springer, 2011

Semantic Databases and Supercomputers
2011

Tracking Structure of Streaming Social Networks
IEEE Computer Society, 2011

Analyzing Massive Social Networks Using Multicore and Multithreaded Architectures
Springer, 2010

Evaluating Cell/B.E software cache for ClustalW
2010

GPUMemSort: A High Performance Graphic Co-processors Sorting Algorithm for Large Scale In-Memory Data
2010

HiCOMB 2010: Message from the workshop chairs
IEEE Computer Society, 2010

Large scale complex network analysis using the hybrid combination of a MapReduce cluster and a highly multithreaded system
IEEE Computer Society, 2010

Massive Social Network Analysis: Mining Twitter for Social Good
IEEE Computer Society, 2010

Massive streaming data analytics: A case study with clustering coefficients
IEEE Computer Society, 2010

Message from general chair
IEEE Computer Society, 2010

On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment
IEEE Computer Society, 2010

Scalable Graph Exploration on Multicore Processors
IEEE Computer Society, 2010

A faster parallel algorithm and efficient multithreaded implementations for evaluating betweenness centrality on massive datasets
IEEE Computer Society, 2009

A Partition-Merge Based Cache-Conscious Parallel Sorting Algorithm for CMP with Shared Cache
IEEE Computer Society, 2009

An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs
ACM, 2009

Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis
IEEE Computer Society, 2009

Faster FAST: Multicore Acceleration of Streaming Financial Data
2009

Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation
IEEE Computer Society, 2009

GTfold: a scalable multicore code for RNA secondary structure prediction
ACM, 2009

Proceedings of the Eighth IEEE International Workshop on High Performance Computational Biology (HiCOMB 2009), Rome, Italy, May 2009.
IEEE Computer Society Press, 2009

Simulating Individual-Based Models of Epidemics in Hierarchical Networks
Springer, 2009

Understanding the design trade-offs among current multicore systems for numerical computations
IEEE Computer Society, 2009

A Prediction Based CMP Cache Migration Policy
IEEE Computer Society, 2008

DOSA: design optimizer for scientific applications
IEEE Computer Society, 2008

Financial modeling on the cell broadband engine
IEEE Computer Society, 2008

High performance MPEG-2 software decoder on the cell broadband engine
IEEE Computer Society, 2008

On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis
IEEE Computer Society, 2008

Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine
IEEE Computer Society, 2008

Petascale Computing for Large-Scale Graph Problems
Springer, 2008

Proceedings of the Seventh IEEE International Workshop on High Performance Computational Biology (HiCOMB 2008), Miami, FL, April 2008.
IEEE Computer Society Press, 2008

SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks
IEEE Computer Society, 2008

A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms
IEEE Computer Society, 2007

Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture
IEEE Computer Society, 2007

An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances
SIAM, 2007

Approximating Betweenness Centrality
Springer, 2007

DOSA: Design Optimizer for Scientific Applications
IEEE Computer Society, 2007

FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine
Springer, 2007

High-Performance Combinatorial Techniques for Analyzing Massive Dynamic Interaction Networks
2007

On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking
IEEE Computer Society, 2007

Petascale Computing for Large-Scale Graph Problems
Springer, 2007

Petascale Computing for Large-Scale Graph Problems
IEEE Computer Society, 2007

Proceedings of the Sixth IEEE International Workshop on High Performance Computational Biology (HiCOMB 2007), Long Beach, CA, April 2007.
IEEE Computer Society Press, 2007

SWARM: A Parallel Programming Framework for Multicore Processors
IEEE Computer Society, 2007

Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics
IEEE Computer Society, 2007

Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors
Springer, 2007

Lecture on Progress toward Petascale Applications in Bioinformatics and Computational Biology
IEEE Computer Society, October (4th Quarter/Autumn) 2007

Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2
IEEE Computer Society, 2006

Efficient Implementation of Irregular Algorithms on Cell Multi-core Architecture. Poster Session.
2006

ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony
IEEE Computer Society, 2006

High-performance computing methods for computational genomics
ACM, 2006

Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks
IEEE Computer Society, 2006

Parallel Shortest Path Algorithms for Solving Large-Scale Instances
American Mathematical Society, 2006

Performance analysis of parallel programs via message-passing graph traversal
IEEE Computer Society, 2006

Proceedings of the Fifth IEEE International Workshop on High Performance Computational Biology (HiCOMB 2006), Rhodes Island, Greece, April 2006.
IEEE Computer Society Press, 2006

A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic
International Society for Computers and Their Applications, 2005

An Empirical Analysis of Parallel Random Permutation Algorithms on SMPs
International Society for Computers and Their Applications, 2005

An Experimental Study of Parallel Biconnected Components Algorithms on Symmetric Multiprocessors (SMPs)
IEEE Computer Society, 2005

BioPerf: a benchmark suite to evaluate high-performance computer architecture on bioinformatics applications
IEEE Computer Society, 2005

BioSPLASH: A sample workload from bioinformatics and computational biology for optimizing next-generation high-performance computer systems. Poster Session.
2005

Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors
Berlin, 2005

High Performance Computing - HiPC 2005, 12th International Conference, Goa, India, December 18-21, 2005, Proceedings
Springer, 2005

High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Springer, 2005

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system
IEEE Computer Society, 2005

On the Architectural Requirements for Efficient Execution of Graph Algorithms
IEEEE Computer Society, 2005

Proceedings of the Fourth IEEE International Workshop on High Performance Computational Biology (HiCOMB 2005), Denver, CO, April 2005.
IEEE Computer Society Press, 2005

A Fast, Parallel Spanning Tree Algorithm for Symmetric Multiprocessors (SMPs)
IEEE Computer Society, 2004

A Novel FDTD Application Featuring OpenMP-MPI Hybrid Parallelization
IEEE Computer Society, 2004

A Parallel State Assignment Algorithm for Finite State Machines
Springer, 2004

Fast Shared-Memory Algorithms for Computing the Minimum Spanning Forest of Sparse Graphs
IEEE Computer Society, 2004

High Performance Bioinformatics
Springer, 2004

Lock-Free Parallel Algorithms: An Experimental Study
Springer, 2004

Proceedings of the ISCA 17th International Conference on Parallel and Distributed Computing Systems, September 15-17, 2004, The Canterbury Hotel, San Francisco, California, USA
ISCA, 2004

Proceedings of the Third IEEE International Workshop on High Performance Computational Biology (HiCOMB 2004), Santa Fe, NM, April 2004.
IEEE Computer Society Press, 2004

The Euler Tour Technique and Parallel Rooted Spanning Tree
IEEE Computer Society, 2004

Proceedings of the ISCA 17th International Conference on Parallel and Distributed Computing Systems
ISCA, September 2004

Proceedings of the Second IEEE International Workshop on High Performance Computational Biology (HiCOMB 2003), Nice, France, April 2003
IEEE Computer Society Press, 2003

Broadcast on Clusters of SMPs with Optimal Concurrency
CSREA Press, 2002

Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs)
Springer, 2002

HiCOMB 2002: Workshop Introduction
IEEE Computer Society, 2002

A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study
Springer, 2001

A New Implmentation and Detailed Study of Breakpoint Analysis
WSPC, 2001

High-Performance Algorithm Engineering for Computational Phylogenetics
Springer, 2001

Industrial applications of high-performance computing for phylogeny reconstruction
Chapman and Hall, 2001

Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture
Springer, 2001

Variation in vegetation growth rates: Implications for the evolution of semi-arid landscapes
2001

An Improved Randomized Selection Algorithm With an Experimental Study
2000

High-Performance Algorithms and Applications for SMP Clusters
NASA, 2000

Tutorial A: Design and Analysis of High Performance Clusters
IEEE Computer Society, 2000

A hierarchical data archiving and processing system to generate custom tailored products from AVHRR data
IEEE Computer Society, 1999

Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster
IEEE Computer Society, 1999

Parallel Algorithms for Image Enhancement and Segmentation by Region Growing with an Experimental Study
IEEE Computer Society, 1996

Parallel Algorithms for Personalized Communication and Sorting with an Experimental Study (Extended Abstract)
ACM, 1996

Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection
IEEE Computer Society, 1996

Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study
ACM, 1995

SIAM Meeting on Algorithm Engineering and Experiments (ALENEX) Steering Committee
Committee Member, 2012

The International Supercomputing Conference (ISC), Steering Committee
Committee Member, 2012

The International Symposium on Experimental Algorithms (SEA) Steering Committee
Committee Member, 2005

ACM Journal of Experimental Algorithmics
Editor, Associate Editor, 2003

IEEE International Conference on High Performance Computing (HiPC) Steering Committee
Committee Member, 2002

IEEE International Parallel and Distributed Processing Symposium (IPDPS) Steering Committee
Committee Member, 2002

IEEE Computer Society, Fellows Evaluation Committee
Committee Member, 2021

2021 Data Science Leadership Summit
Committee Member, 2021

The 25th IEEE High Performance Extreme Computing Conference (HPEC)
Committee Member, 2021

IEEE International Parallel and Distributed Processing Symposium (IPDPS), General Co-Chair
Conference-Related, 2021

1st ACM International Conference on AI in Finance
Committee Member, 2020