Yehoshua Perl
Professor, Computer Science
Guttenberg Information Technologies Center (GITC)
Education
Ph.D.
; The Weizmann Institute of Science
;
; 1975
M.S. ; The Weizmann Institute of Science ; ; 1971
B.S. ; Bar-Ilan University ; ; 1969
M.S. ; The Weizmann Institute of Science ; ; 1971
B.S. ; Bar-Ilan University ; ; 1969
2025 Fall Courses
CS 700B - MASTER'S PROJECT
CS 726 - INDEPENDENT STUDY II
CS 792 - PRE-DOCTORAL RESEARCH
CS 725 - INDEPENDENT STUDY I
CS 701B - MASTER'S THESIS
CS 790A - DOCT DISSERTATION & RES
CS 488 - INDEPENDENT STUDY IN CS
CS 489 - COMPUTER SCIENCE RESEARCH PROJ
CS 726 - INDEPENDENT STUDY II
CS 792 - PRE-DOCTORAL RESEARCH
CS 725 - INDEPENDENT STUDY I
CS 701B - MASTER'S THESIS
CS 790A - DOCT DISSERTATION & RES
CS 488 - INDEPENDENT STUDY IN CS
CS 489 - COMPUTER SCIENCE RESEARCH PROJ
Past Courses
CS 435: ADV DATA STRUCT-ALG DES
CS 610: DATA STRUCTURE & ALG
CS 698: ST:DEEP WEB & MEDICAL TERMINOLG
CS 786: ST:DEEP WEB
CS 610: DATA STRUCTURE & ALG
CS 698: ST:DEEP WEB & MEDICAL TERMINOLG
CS 786: ST:DEEP WEB
Conference Paper
"Using clinical entity recognition for curating an interface terminology to aid fast skimming of EHRs"
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), December, 2024.
"Skimming of Electronic Health Records Highlighted by an Interface Terminology Curated with Machine Learning Mining"
17th International Conference on Health Informatics—HEALTHINF, January (1st Quarter/Winter), 2024.
"Using annotation for computerized support for fast skimming of cardiology electronic health record notes"
IEEE, December, 2023.
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), December, 2024.
"Skimming of Electronic Health Records Highlighted by an Interface Terminology Curated with Machine Learning Mining"
17th International Conference on Health Informatics—HEALTHINF, January (1st Quarter/Winter), 2024.
"Using annotation for computerized support for fast skimming of cardiology electronic health record notes"
IEEE, December, 2023.
Journal Article
Ling Zheng, Yehoshua Perl, Yongqun He.
2023. "Big knowledge visualization of the COVID-19 CIDO ontology evolution."
BMC Medical Informatics and Decision Making , vol. 23 , pp. 1-18.
V K Keloth, S Zhou, L Lindemann, L Zheng, G Elhanan, A J Einstein, James Geller, Yehoshua Perl. 2023. "Mining of EHR for interface terminology concepts for annotating EHRs of COVID patients.." BMC medical informatics and decision making , vol. 23 , no. Suppl 1 , pp. 1-18.
Michael H. Halper, Larisa Soldatova Soldatova, Matthias Brochhausen, Fatima S. Maikore, Christopher Ochs, Yehoshua Perl. 2023. "Guidelines for the Reuse of Ontology Content." Applied Ontology , vol. 18 , no. 1 , pp. 5-29.
Cong Liu, Junghwan Lee, Casey Ta, Ali Soroush, James R Rogers, Jae Hyun Kim, Karthik Natarajan, Jason Zucker, Yehoshua Perl, Chunhua Weng. 2022. "Risk Factors Associated With SARS-CoV-2 Breakthrough Infections in Fully mRNA-Vaccinated Individuals: Retrospective Analysis." JMIR Health and surveillance , vol. 8 , no. 5:e35311 .
Ling Zheng, Yehoshua Perl, Yongqun He, Christopher Ochs, James Geller, Hao Liu, Vipina K Keloth. 2021. "Visual Comprehension and Orientation into the COVID-19 CIDO Ontology. Journal of Biomedical Informatics." Journal of Biomedical Informatics , vol. 120 , no. C .
V K Keloth, S Zhou, L Lindemann, L Zheng, G Elhanan, A J Einstein, James Geller, Yehoshua Perl. 2023. "Mining of EHR for interface terminology concepts for annotating EHRs of COVID patients.." BMC medical informatics and decision making , vol. 23 , no. Suppl 1 , pp. 1-18.
Michael H. Halper, Larisa Soldatova Soldatova, Matthias Brochhausen, Fatima S. Maikore, Christopher Ochs, Yehoshua Perl. 2023. "Guidelines for the Reuse of Ontology Content." Applied Ontology , vol. 18 , no. 1 , pp. 5-29.
Cong Liu, Junghwan Lee, Casey Ta, Ali Soroush, James R Rogers, Jae Hyun Kim, Karthik Natarajan, Jason Zucker, Yehoshua Perl, Chunhua Weng. 2022. "Risk Factors Associated With SARS-CoV-2 Breakthrough Infections in Fully mRNA-Vaccinated Individuals: Retrospective Analysis." JMIR Health and surveillance , vol. 8 , no. 5:e35311 .
Ling Zheng, Yehoshua Perl, Yongqun He, Christopher Ochs, James Geller, Hao Liu, Vipina K Keloth. 2021. "Visual Comprehension and Orientation into the COVID-19 CIDO Ontology. Journal of Biomedical Informatics." Journal of Biomedical Informatics , vol. 120 , no. C .
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Conference Proceeding
"Generating Training Data for Concept-Mining for an ‘Interface Terminology’ Annotating Cardiology EHRs"
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), December, 2020.
"Mining Concepts for a COVID Interface Terminology for Annotation of EHRs"
IEEE International Conference on Big Data (Big Data), December, 2020.
"Transfer Learning from BERT to Support Insertion of New Concepts into SNOMED CT"
AMIA ... Annual Symposium proceedings, 2019.
"Training a Convolutional Neural Network with Terminology Summarization Data Improves SNOMED CT Enrichment"
AMIA Annual Symposium, November, 2019.
"Enrichment of SNOMED CT Ophthalmology component to support EHR coding"
BIBM, December, 2018.
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), December, 2020.
"Mining Concepts for a COVID Interface Terminology for Annotation of EHRs"
IEEE International Conference on Big Data (Big Data), December, 2020.
"Transfer Learning from BERT to Support Insertion of New Concepts into SNOMED CT"
AMIA ... Annual Symposium proceedings, 2019.
"Training a Convolutional Neural Network with Terminology Summarization Data Improves SNOMED CT Enrichment"
AMIA Annual Symposium, November, 2019.
"Enrichment of SNOMED CT Ophthalmology component to support EHR coding"
BIBM, December, 2018.
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Other
"Tribal abstraction network"
US20170039295A1, 2017.
""
US9286381B2, 2016.
"How to Summarize Big Knowledge Subjects"
International Conference on Biological Ontology & BioCreative, August, 2016.
"Neighborhood auditing tool and user interface"
US8788974, July (3rd Quarter/Summer), 2014.
"Intersection ontologies for organizing data"
US7636702, December, 2009.
US20170039295A1, 2017.
""
US9286381B2, 2016.
"How to Summarize Big Knowledge Subjects"
International Conference on Biological Ontology & BioCreative, August, 2016.
"Neighborhood auditing tool and user interface"
US8788974, July (3rd Quarter/Summer), 2014.
"Intersection ontologies for organizing data"
US7636702, December, 2009.